פרופ' יצחק רבין

פרופ'
פרופ' יצחק רבין
טלפון: 
דוא"ל: 
משרד: 

תחומי מחקר

ביופיסיקה ופיסיקה של חומר מעובה רך: אלסטיות וטופולוגיה של דנ"א, אינטראקציה בין דנ"א לחלבונים, תעלות ננומטריות של חלבונים, תעלות גרעיניות בתאים, מבנה ודינמיקה של כרומטין.

 

Biophysics and Soft Condensed Matter Physics:  Transport of DNA and of Proteins Through Nanochannels, the Nuclear Pore Complex, Structure and Dynamics of Chromatin, Elasticity and Topology of DNA, DNA- Protein Interactions, Grafted DNA Monolayers

קורות חיים

 

1991-present   Professor  (Chairman 2005-2008)

            Department of Physics

            Bar-Ilan University

            Ramat-Gan, Israel

1986-1991       Associate Professor

            Department of Chemical Physics

            The Weizmann Institute of Science

            Rehovot, Israel

1983-1985       Senior Staff Scientist

            Center for Studies of Nonlinear

            Dynamics, La Jolla Institute,

            La Jolla, CA

1981-1983       Lecturer

            Department of Chemistry and Biochemistry

            University of California

            Los Angeles, CA

1980-1981       Research Scientist

            Max Planck Institute for Quantum Optics

            Garching, Germany

 

   VISITING PROFESSOR

   

1986-1988   La Jolla Institute, La Jolla

1989    College de France, Paris

1989    Institute for Theoretical Physics, UC Santa Barbara

1990    James Franck Institute, University of Chicago

1990-1991    Materials Department, UC Santa Barbara

1991    Exxon Research and Engineering, Annandale

1991    Department of Chemistry, University of Southern California

1993    Yukawa Institute for Theoretical Physics, Kyoto University

1995-1996       Center for Studies in Physics and Biology, Rockefeller University

1997    Curie Institute, Paris

1997-1998       Center for Studies in Physics and Biology, Rockefeller University

2002        Aspen Center for Physics

2002    Center for Studies in Physics and Biology, Rockefeller University

2003    Rowland Institute, Harvard University

2004    Institute for Mathematics and its Applications, University of Minnesota

2005   Department of Chemistry, Harvard University

2009   Center for Soft Matter Physics, New York University

2009-2011   James Franck Institute, University of Chicago and Department of Biomedical Engineering, Northwestern University

2011  Kavli Institute for Theoretical Physics, UC Santa Barbara

2012 Department of Physics, University of Colorado at Boulder

2013 Center for Soft Matter Research, NYU

פירסומים

1.L.P. Horowitz and Y. R., "Relativistic diffraction", Nuovo Cimento Lett. 15, 501 (1976).

2.L.P. Horowitz and Y. R., "Particles, mass spectra and interference in relativistic quantum theory" in Group Theoretical Methods in Physics, Eds. R.T. Sharp and B. Kelman, Academic Press (1977).

3.Y. R. and A. Ben-Reuven, "Theory of resonance excitation of N level atomic systems by strong coherent radiation", Phys. Rev. A 19, No. 4, 1697 (1979).

4.A. Ben-Reuven and Y. R., "Theory of resonance scattering and absorption of strong coherent radiation by thermally relaxing atomic systems", Phys. Rev. A 19, No. 5, 2056 (1979).

5.Y. R., M. Berman and A. Ben-Reuven, "Theory of the double-resonance Raman amplifier", J. Phys. B 13, 2127 (1980).

*6.Y. R. and A. Ben-Reuven, "Resonance fluorescence and resonance Raman lineshapes in strong radiation fields", J. Phys. B 13, 2011 (1980).

7.Y. R. and S. Mukamel, "Unified theory for collisional dephasing in strong radiation fields - a generalization of the Karplus-Schwinger formula", J. Phys. A 13, L331 (1980).

8.A. Ben-Reuven and Y. R., "N level multiple resonances", in Photoselective Chemistry-Part I, Eds. J. Jortner, S.A. Rice and R.D. Levine (Wiley, 1981).

9.P. Hering and Y. R., "Atom-molecule radiative collisions - the inelastic case", Chem. Phys. Lett77, 506 (1981).

10.Y. R. and S. Mukamel, "Unified theory of pressure broadened absorption spectra in strong radiation fields" in Spectral Lineshapes 1, ed. B. Wende (Walter de Gruyter, Berlin/New York, 1981).

11.S. Mukamel, D. Grimbert and Y. R., "Non-impact collisional broadening of resonance Raman spectra in strong radiation fields", Opt. Commun40, 185 (1982).

*12.Y. R. and F. Rebentrost, "On self-shift and broadening of Doppler-free Rydberg ²S spectral lines in alkali atoms", Opt. Commun40, 257 (1982).

13.Y. R., D. Grimbert and S. Mukamel, "Non-impact theory of absorption line broadening in strong radiation fields", Phys. Rev. A 26, 271 (1982).

14.S. Mukamel, D. Grimbert and Y. R., "Non-impact theory of line broadening in strong radiation fields - resonance Raman line shapes", Phys. Rev. A 26, 341 (1982).

*15.Y. R., W.E. McMullen and W.M. Gelbart, "Phase diagram behaviors for rod/plate liquid crystal mixtures", Mol. Cryst. Liq. Cryst89, 67 (1982).

16.Y. R., A. Ben-Shaul and W.M. Gelbart, "Anisotropy induced in a semi-flexible polymer by a liquid-crystalline solvent", in Liquid Crystals and Ordered Fluids 4, eds. A. Griffin and J.F. Johnson (Plenum Press, New York, 1983).

17.Y. R. and S. Mukamel, "Collisional redistribution of radiation in intense laser fields", in Spectral Line Shapes 2, ed. K. Burnett (Walter de Gruyter, Berlin/New York, 1983).

18.A. Ben-Shaul, Y. R. and W.M. Gelbart, "On the stretching of alkyl chains by nematics", J. Chem. Phys78, 4303 (1983).

19.Y. R., "The second virial coefficient of polymeric globules - a simple model", J. Chem. Phys79, 3988 (1983).

20.M. Gitterman and Y. R., "Anomalous increase of the time-lag in nucleation near the critical point", J. Chem. Phys. (Commun.80, 2234 (1984).

21.Y. R. and M. Gitterman, "Time-dependent effects in nucleation near the critical point", Phys. Rev. A 29, 1496 (1984).

22.M. Gitterman, I. Edrei and Y. R., "Time-dependent nucleation in systems with conserved order parameter", in Applications of Field Theory to Statistical Mechanics, ed. L. Garrido, Lecture Notes in Physics 216, (Springer Verlag, Heidelberg, 1984).

23.Y. R., "Surface tension of polymer melts: Non-local entropy effects", J. Polym. Sci., Polym. Lett22, 335 (1984).

24.Y. R. and H. Reiss, "Density profiles of polymer containing nuclei", Macromolecules (Commun.) 17, 2450 (1985).

25.Y. R., "On the universality of ideal Zimm dynamics of polymers in extensional flows", J. Polym. Sci., Polym. Lett23, 11 (1985).

26.Y. R. and J.W. Dash, "Dynamics of stretched polymer chains. II", Macromolecules18, 442 (1985).

27.Y. R. and D.B. Creamer, "Conformational energy contributions to energy storage in deformed macromolecules", Macromolecules (Commun.) 18, 301 (1985).

*28.F.S. Henyey and Y. R., "Rotational isomeric model of the coil stretching transition of semiflexible polymers in elongational flow", J. Chem. Phys82, 4362 (1985).

29.J.W. Dash, F.S. Henyey and Y. R., "Dilute polymer solutions in elongational flow", Physico Chemical Hydrodynamics6, 555 (1985).

*30.Y. R., F.S. Henyey and R.K. Pathria, "Scaling behavior of dilute polymer solutions in elongational flows, Phys. Rev. Lett55, 201 (1985).

31.Y. R., F.S. Henyey and R.K. Pathria, "Theoretical studies of the coil stretching transition of polymers in elongational flows", in Polymer-Flow Interaction, ed. Y. Rabin (AIP Press, New York, 1985).

32.D.B. Creamer, R.K. Pathria and Y. R., "Statistical thermodynamics of polyalkane-like chains in a uniaxial environment", J. Chem. Phys84, 476 (1986).

*33.Y. R., F.S. Henyey and D.B. Creamer, "Flow modification by polymers in strong elongational flows", J. Chem. Phys85, 4696 (1986).

34.K. Dysthe, G. Rovner and Y. R., "Damping of capillary waves by polymeric monolayers - comparison with hydrodynamic theory", J. Phys. Chem. (Lett.) 90, 3894 (1986).

35.Y. R., "Anomalous viscosity of polyelectrolyte solutions", Phys. Rev. A 35, 3579 (1987).

36.Y. R., "Polymer fracture in steady and transient elongational flows", J. Chem. Phys.(Commun.86, 5215 (1987).

37.Y. R., "On the self consistent field approach to polyion dimensions in dilute solutions", J. Phys. A 20, 4031 (1987).

38. B. Friedman and Y. R., "Fluctuating hydrodynamics approach to dilute polymer solutions: I. Solvent velocity correlations and weak flow", J. Chem. Phys87, 7261 (1987).

39.Y. R., "Macromolecules in elongational flows: metastability and hysteresis", in Amorphous Polymers and Non-Newtonian Fluids, eds. C. Dafermos, J.L. Ericksen and D. Kinderlehrer, The IMA Volumes in Mathematics and its Applications, 6, (Springer Verlag, New York, 1987).

40. Y. R., "Polymer conformation in elongational flow", J. Chem. Phys88, 4014 (1988).

*41. J.A. Odell, A. Keller and Y. R., "Flow-induced scission of isolated macromolecules", J. Chem. Phys88, 4022 (1988).

*42. J. Cohen, Z. Priel and Y. R., "Viscosity of dilute polyelectrolyte solutions", J. Chem. Phys88, 7111 (1988).

43. J. Cohen, Z. Priel and Y. R., "Molecular weight dependence of the viscosity in dilute polyelectrolyte solutions", Polymer Commun29, 235 (1988).

44. Y. R., "Macroscopic hydrodynamics of dilute polymer solutions", Europhys. Lett7, 25 (1988).

45. Y. R., J. Cohen and Z. Priel, "Viscosity of polyelectrolyte solutions - the generalized Fuoss law", J. Polym. Sci.; Polym. Lett26, 397 (1988).

46. Y. R., "On the mechanism of stretching and breaking of polymers in elongational flows", J. Non-Newt. Fluid Mech30, 119 (1988).

47. Y. R., S.Q. Wang and D.B. Creamer, "Linearized velocity disturbances and dynamic Oseen tensors in simple shear and elongational flows", J. Chem. Phys. 90, 570 (1989).

48. Y. R. and K. Kawasaki, "Suppression of excluded-volume exponents in shear flow of dilute polymer solutions", Phys. Rev. Lett62, 2281 (1989).

49. Y. R., S.Q. Wang and K.F. Freed, "Dilute polymer solutions in flow-derivation of hydrodynamic equations", Macromolecules 22, 2420 (1989).

50. H.C. Ottinger and Y. R., "Diffusion equation versus coupled Langevin equations approach to hydrodynamics of dilute polymer solutions", J. Rheol. 33, 725 (1989).

51. Y. R. and B. Zielinska, "Scale-dependent enhancement and damping of vorticity by polymers in elongational flow", Phys. Rev. Lett63, 512 (1989).

52. H.C. Ottinger and Y. R., "Renormalization group calculation of viscometric functions based on conventional polymer kinetic theory", J.Non-Newt. Fluid Mech33, 53 (1989).

53.Y. R., H.C. Ottinger and K. Kawasaki, "On shear thinning in dilute polymer solutions", in Macromolecular Liquids, Materials Research Society Symposium Proceedings Vol. 177, Eds. C.R. Safinya, S.A. Safran and P.A. Pincus (MRS, Pittsburgh, 1989).

54. E. Duering and Y. R., "Polymers in shear flow near repulsive boundaries", Macromolecules 23, 2232 (1990).

55. Y. R., "Slowing down of polymer diffusion near a wall", Macromolecules Commun23, 3194 (1990).

56. Y. R. and S. Alexander, "Stretching of grafted polymer layers", Europhys. Lett13, 49 (1990).

57. S. Alexander and Y. R., "Polymer gels in uniaxial deformation", J. Phys.: Condensed Matter 2, SA313 (1990).

58. Y. R. and H.C. Ottinger, "Dilute polymer solutions: internal viscosity, dynamic scaling, shear thinning and frequency-dependent viscosity", Europhys. Lett13, 423 (1990).

59. E. Duering and Y. R., "Polymers in Poiseuille flow - dynamic Monte-Carlo simulation", J. Rheol35, 213 (1991).

60. Y. R., G.H. Fredrickson and P. Pincus, "Compression of grafted polyelectrolyte layers", Langmuir 7, 2428 (1991).

61. Y. R. and J.F. Marko, "Microphase separation in charged diblock copolymers: the weak segregation limit", Macromolecules 24, 2134 (1991).

62. S. Alexander, Y. R. and R. Zeitak, "Vacancy-controlled interdiffusion: non-linear effects", J. Chem. Phys95, 2012 (1991).

63. M.A. Smith, Y. Bar-Yam, Y. R., C.H. Bennett, N. Margolus and T. Toffoli, "Parallel processing simulation of polymer dynamics", in Complex Fluids, Materials Research Society Symposium Proceedings Vol. 248, Eds. D. Weitz, E. Sirota, T. Witten and J. Israelachvili (MRS, Pittsburgh, 1991).

64. R. Bruinsma and Y. R., "Are concentration fluctuations in smectics suppressed or enhanced by shear flow?", in Complex Fluids, Materials Research Society Symposium Proceedings Vol. 248, Eds. D. Weitz, E. Sirota, T. Witten and J. Israelachvili (MRS, Pittsburgh, 1991).

65. J. Marko and Y. R., "Microphase separation of charged diblock copolymers", in Complex Fluids, Materials Research Society Symposium Proceedings Vol. 248, Eds. D. Weitz, E. Sirota, T. Witten and J. Israelachvili (MRS, Pittsburgh, 1991).

66. Y. Bar-Yam, Y. R. and M.A. Smith, "Cellular authomaton approach to polymer simulations", Macromolecules Rep. 25, 2985 (1992).

*67. R. Bruinsma and Y. R., "Shear flow enhancement and suppression of fluctuations in smectic liquid crystals", Phys. Rev. A 45, 994 (1992).

68. J. Marko and Y. R., "Microphase separation of charged diblock copolymers: Solutions and melts", Macromolecules 25, 1503 (1992).

69. O. Zak, J. Stavans and Y. R., "Viscosity of vibrated granular media", Europhys. Lett17, 315 (1992).

70. T.A. Witten and Y. R., "Comment on: Scale-dependent enhancement and damping of vorticity by polymers in elongational flow", Phys. Rev. A 45, 4178 (1992).

71. Y. R. and E.T. Samulski, "Swelling of constrained polymer gels", Macromolecules 25, 2985 (1992).

72. J.J. de Pablo, H.C. Ottinger and Y. R., "Shear flow effects on depletion layers in solutions of rodlike polymers", AIChE J. 38, 273 (1992).

73. Y. R. and R. Bruinsma, "Strain effects on thermal fluctuations in soft solids: Butterfly patterns", Europhys. Lett20, 79 (1992).

74. M.A. Smith, Y. Bar-Yam, Y. R., C.H. Bennet, N. Margolus and T. Toffoli, "Parallel processing simulation of polymers", Comput. Polym. Sci2, 165 (1992).

75. A.Y. Grosberg, Y. R., S. Havlin and A. Nir, "Self-similarity in the structure of DNA- why are introns necessary?", Biofizika 38, 75, (1993).

76. A.Y. Grosberg, Y. R., S. Havlin and A. Nir, "Crumpled globule model of three-dimensional structure of DNA", Europhys. Lett23, 373 (1993).

77. Y. R. and I. Hersht, "Thin liquid layers in shear: non-Newtonian effects", Physica A 200, 708 (1993).

78. Y. R., P. Pekarski and R. Bruinsma, "Charge effects on density fluctuations in stretched gels", Europhys. Lett. 24, 145 (1993).

79. R. Bruinsma and Y. R., "Mesoscopic physics of swollen polymer networks: Statics and dynamics", Phys. Rev. E 49, 554 (1993).

80. B. Ostrovsky, M.A. Smith, M. Biafore, Y. Bar-Yam, Y. R., N. Margolus and T. Toffoli, "Massively parallel architectures and polymer simulation", in Parallel Processing for Scientific Computing, Vol. 1, Proceedings of 6th SIAM Conference, Eds. R.F. Sincovec, M.R. Lenze, L. R. Petzold and D.A. Reed (SIAM, 1993).

81.Y. R., P. Pekarski and R. Bruinsma, "Fluctuations in strained polymer gels", in Polymeric Materials Science and Engineering 68, 229 (1993).

82. Y. R and A. Onuki, "Osmotic and longitudinal moduli of polymer gels", Macromolecules 27, 870 (1994).

83. I. Hersht and Y. R., "Shear melting of solid-like boundary layers in thin liquid films", J. Non Cryst. Solids 172-174, 857 (1994).

84. P. Pekarski, Y. R. and M. Gottlieb, "Scaling approach to differential swelling of polymer solutions and gels", J. Physique II (Paris) 4, 1677 (1994).

85. K. Sekimoto and Y. R., "Role of mechanical pressure in permeation of solvent through gels", Europhys. Lett27, 445 (1994).

86. S.V. Panyukov, Y. R. and A. Feigel, "Solid elasticity and liquid-like behavior in randomly crosslinked polymer networks", Europhys. Lett28, 149 (1994).

87. P. Pekarski, A. Tkachenko and Y. R., "Deformation-induced anomalous swelling in topologically disordered gels", Macromolecules 27, 7192 (1994).

*88. Y. R, A.Y. Grosberg and T. Tanaka, "Metastable globules in good solvents: topologically stabilized state of polymers", Europhys. Lett32, 505 (1995).

89. A. Tkachenko and Y. R., "Coupling between thermodynamics and conformation in wormlike polymer nematics", Macromolecules 28, 8646 (1995).

90. S.V. Panyukov and Y. R., "Statistical physics of polymer gels", Physics Reports 269, 1 (1996).

91. A. Tkachenko and Y. R., "Fluctuation--stabilized surface freezing of chain molecules", Phys. Rev. Lett76, 2527 (1996).

92. Y.R. and S.V. Panyukov, "Recent developments in the theory of polymer gels", J. Computer--Aided Materials Design 3, 281 (1996).

93. S.V. Panyukov and Y. R., "Polymer gels: frozen inhomogeneities and density fluctuations", Macromolecules 29, 7960 (1996).

94. A.Y. Grosberg, A. Feigel and Y. R, "Flory-type theory of swelling and collapse of a polymeric knot", Phys. Rev. E 54, 6618 (1996).

95. S.V. Panyukov and Y. R., "Volume transition, phase separation and anisotropic surface phases in charged gels", Macromolecules 29, 8530 (1996).

96.Y.R. and S.V. Panyukov, "Scattering profiles in charged gels: frozen inhomogeneities, thermal fluctuations and microphase separation", Macromolecules 30, 301 (1997).

97. A. Tkachenko and Y. R., "Theory of surface freezing of alkanes", Phys. Rev. E 55, 778 (1997).

98. A. Tkachenko and Y. R., "Confinement-induced freezing and the Lindemann criterion", Solid State Commun103, 361 (1997).

99. A. Tkachenko and Y. R., "What drives the surface freezing in alkanes?", Phys. Rev. Lett79, 532 (1997).

100. S.V. Panyukov and Y. R., "Interaction between randomly charged rods and plates: energy landscapes, stick slip and recognition at a distance", Phys. Rev. E56, 7053 (1997).

101. A. Tkachenko and Y. R., "Effect of boundary conditions on fluctuations and solid-liquid transition in confined films", Langmuir 13, 7146 (1997).

102. A. Tkachenko and Y. R., "Fluctuations, Lindemann criterion and liquid-solid transition in thin films", in Statistical Methods in Physics and Biology, Materials Research Society Symposium Proceedings (1997).

103. M. Shibayama, F. Ikkai, Y. Shiwa and Y. R., "Effect of degree of cross -linking on spatial inhomogeneity in charged gels: 1. Theoretical predictions and light scattering study", J. Chem. Phys107, 5227 (1997).

104. S.V. Panyukov and Y. R., "Microstructure and phase diagrams of polymer gels", Physica A 249, 239 (1998).

105. S.V. Panyukov and Y. R., "Field theoretical methods in physics of polymer networks", in Theoretical and Mathematical Methods in Polymer Research, A. Grosberg Ed. Academic Press (1998).

106. N. Ben-Ami, A. Radko, U. Ben-Ami, K. Lieberman, Z. Rothman, Y. R. and A. Lewis, "Near-field optical imaging of unstained bacteria: comparison with normal atomic force and far-field optical microscopy in air and aqueous media", Ultramicroscopy 71, 321 (1998).

107. Y. R., S.V. Panyukov and M. Wilhelm, "Energy landscapes of interacting randomly and periodically charged rigid polyampholytes", Acta Polymerica 49, 544 (1998).

108. S.V. Panyukov and Y. R., "Statistical physics of interacting dislocation loops and their effect on elastic moduli of isotropic solids", Phys. Rev. B 59, 13657, (1999).

109. Y. R. and S. Alexander, "Osmotic pressure in solutions of stretched polymers", in Flexible Polymer Chains in Elongational Flow: Theories and experiments, Eds. T.Q. Nguyen and H.H. Kausch (Springer, 1999).

110. C. Goren, Y. R., M. Rosenbluh and Y. Cohen, "Elastic recovery of gels on mesoscopic length scales - a photon correlation spectroscopy study", Macromolecules (Commun.33, 5757 (2000).

111. S.V. Panyukov and Y. R., "Thermal fluctuations of filaments with spontaneous curvature and torsion", Phys. Rev. Lett85, 2404 (2000).

112. S.V. Panyukov and Y. R., "Fluctuating filaments: Statistical mechanics of helices", Phys. Rev. E 62, 7135 (2000).

113. F. Gerbal, P. Chaikin, Y. R. and J. Prost, "An elastic analysis of Lysteria monocytogenes propulsion", Biophys. J. 79, 2259 (2000).

114. H. Salman, D. Zbaida, Y. R., D. Chateney and M. Elbaum "Uptake of DNA to the cell nucleus studied by single-molecule manipulation", Biophys. J80, 783 (2001).

115. H. Salman, D. Zbaida, Y. R., D. Chateney and M. Elbaum "Kinetics and mechanism of DNA uptake into the cell nucleus", PNAS 98, 7247 (2001).

116. S.V. Panyukov and Y. R., "Fluctuating elastic rings: statics and dynamics", Phys. Rev. E 64, 011911 (2001).

117. Y. Kats, D.A.  Kessler and Y. R., "Frenet algorithm for simulations of fluctuating continuous elastic filaments", Phys. Rev. E 65 020801 (R) (2002).

*118. S.V. Panyukov and Y. R., "On the deformation of fluctuating elastic ribbons", Europhys. Lett. 57, 512 (2002).

119. S.V. Panyukov and Y. R., "Metastable lattice of droplets in phase separating polymer blends", Phys. Rev. E  65, 061803 (2002).

120. A.D. Drozdov, S.V. Panyukov and Y. R., "Buckling of spontaneously twisted ribbons", Physica A 314, 125 (2002).

121. D.A.  Kessler and Y. R., "Stretching instability of helical springs", Phys. Rev. Lett. 90, 024301 (2003).

122. D.A. Kessler and Y. R., "Effect of curvature and twist on the conformations of a fluctuating ribbon", J. Chem. Phys118, 897 (2003).

123. T. Kustanovich, Y. R. and Z. Olami, “Organization of atomic bond tensions in model glasses”, Phys. Rev. B 67, 104206 (2003).

124. T. Kustanovich and Y. R. “Glass does not play dice: observation of non-random organization of atomic bond tensions in glasses”, Physica A 330, 271 (2003).

125. N. Schupper, I. Freund, Y. R., S. Greenstein and M. Rosenbluh, "Effect of thermal expansion on speckle correlation from surface scattering of a transparent dielectric slab", Opt. Eng43, 398 (2004).

*126. T. Kustanovich and Y. R. “Metastable network model of protein transport through nuclear pores”, Biophys. J. 86, 2008 (2004).

127. D. A. Kessler and Y. R., “Distribution functions for filaments under tension”, J. Chem. Phys. 121, 1155 (2004).

128. J. Mathe, H. Visram, V. Viasnoff, Y. R. and A. Meller, "Nanopore spectroscopy of individual DNA hairpin molecules", Biophys. J. 87, 3708 (2004).

129. S. Rappaport and Y. R., "Effect of spontaneous curvature and sequence disorder on cyclization of fluctuating filaments", Macromolecules (Commun.) 37, 7848 (2004).

130. Y. R. and M. Tanaka, "DNA in nanopore - counterion condensation and coion depletion", Phys. Rev. Lett. 94, 148103 (2005).

131. S.G. Ray, H. Cohen, R. Naaman and Y. R., "Where is the sodium in self-assembled monolayers of ssDNA?", J. Am. Chem. Soc. (Commun.) 127, 17138 (2005).

132. J. Mathe, A. Arinstein, Y. R. and A. Meller, "Equilibrium and irreversible unzipping of DNA in a nanopore",  Europhys. Lett73, 128 (2006).

133. S. Rappaport, Y. R. and  A. Yu. Grosberg, "Worm-like polymer loops and Fourier knots", J. Phys. A: Math. Gen. 39, L507-L513 (2006).

134. O. Peleg, M. Kroger, I. Hecht and Y. R., "Filamentous networks in phase separating two-dimensional gels", Europhys. Lett. 77, 58007 (2007).   

135. S. Rappaport and Y. R., “Differential geometry of polymer models: worm-like chains, ribbons and Fourier knots”,  J. Phys. A: Math. Gen. 40, 4455 (2007).

136. A. Yu. Grosberg and Y. R., “Metastable tight knots in a worm-like polymer”,  Phys. Rev. Lett. 99, 217801 (2007).

137.  M. Kroger, O. Peleg, Y. Ding and Y. R., “Formation of double helical and filamentous structures in models of physical and chemical gels”, Soft Matter 4, 18 (2008).

138. O. Peleg, M. Kroger and Y. R., "Model of microphase separation in two-dimensional gels",  Macromolecules 41, 3267 (2008).

139.  N. Schupper, Y. R. and M. Rosenbluh, “Multiple stages in the aging of a physical polymer gel”, Macromolecules 41, 3983 (2008).

140. S. Rappaport and Y. R., “Model of DNA bending by cooperative binding of proteins”, Phys. Rev. Lett101, 038101 (2008).

141. O. Peleg, Y. R. and M. Kroger, “Effect of network topology on phase separation in two-dimensional Lennard-Jones networks”, Phys. Rev. E. (Rapid Commun.), 79, 040401 (2009).

142. S. Rappaport, S. Medalion and Y. R., “Protonation-induced transitions in DNA brush”, Soft Matter (Commun.) 5, 3010 (2009).

143. S. Rappaport and Y. R., “Bending affects entropy of semi-flexible polymers: application to protein-DNA complexes”, Phys. Rev. E. 80, 052801 (2009).  

144. M. Wanunu, W. Morrison, Y. R., A.Y. Grosberg and A. Meller, “Electrostatic focusing of unlabeled DNA by into nanoscale pores using a salt gradient”, Nature Nanotechnology 5, 160 (2010).

145. S. Medalion, S. Rappaport and Y. R., “Coupling of  twist and writhe in short DNA loops”, J. Chem. Phys. 132, 045101 (2010).

146. S. Medalion, D. Kessler and Y. R., “Effect of spontaneous twist on DNA minicircles”, Biophys. J. 99, 2987-2994 (2010).

147. A. Y. Grosberg and Y. R., “Capture of DNA into nanopore: diffusion and electrohydrodynamics combined”, J. Chem. Phys. 133, 165102 (2010).

148. M. Lindner, G. Nir, H. R. C. Dietrich, S. Medalion, Y. R. and Y. Garini, “Force-free measurements of the conformations of DNA tethered to a wall”, Phys. Rev. E 83, 011916 (2011).

149. M. J. Uline, Y. R. and I. Szleifer, “Effect of salt concentration on charge regulation in polyacid monolayers”, Langmuir 27, 4679 (2011).

150. O. Peleg, M. Tagliazucchi, M. Kroger, Y. R. and I. Szleifer, “Morphology control of hairy nanopores”, ACS Nano 54737 (2011).

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153. M. Tagliazucchi, Y. R. and I. Szleifer, “Ion transport and molecular organization are coupled in polyelectrolyte modified nanopores”, JACS 133, 17753 (2011).

154. S. Medalion and Y. R., “On binding of DNA-bending proteins to DNA minicircles”, J. Chem. Phys. 136, 025102 (2012).

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159. M. Tagliazucchi, O. Peleg, M. Kroger, Y. R. and I. Szleifer, “Effect of charge, hydrophobicity and amino-acid sequence of nucleoporins on the translocation of model cargoes through the nuclear pore complex”, PNAS 110, 3363 (2013).

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קורסים

86-215: Thermodynamics and statistical mechanics 1

86-216: Statistical mechanics 2

86-844: Physical biology of the cell

86-120: Electricity and Magnetism